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Sample GSM1675090 Query DataSets for GSM1675090
Status Public on May 06, 2015
Title becic-00235: PN44: HG_U95B
Sample type RNA
 
Source name P44_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T4a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 25.4572 A 0.910522
AFFX-MurIL10_at 89.6018 A 0.617401
AFFX-MurIL4_at 23.2638 A 0.860518
AFFX-MurFAS_at 49.7392 A 0.794268
AFFX-BioB-5_at 875.088 P 0.0032123
AFFX-BioB-M_at 1446.1 P 0.00141043
AFFX-BioB-3_at 634.672 P 0.0044838
AFFX-BioC-5_at 3130.61 P 0.000169227
AFFX-BioC-3_at 2378.01 P 4.42873e-05
AFFX-BioDn-5_at 1880.68 P 8.14279e-05
AFFX-BioDn-3_at 14129 P 6.02111e-05
AFFX-CreX-5_at 26407.7 P 4.42873e-05
AFFX-CreX-3_at 32368.5 P 4.42873e-05
AFFX-BioB-5_st 26.4208 A 0.672921
AFFX-BioB-M_st 95.9003 A 0.672921
AFFX-BioB-3_st 37.5254 A 0.876428
AFFX-BioC-5_st 47.6887 A 0.891021
AFFX-BioC-3_st 64.0169 A 0.737173
AFFX-BioDn-5_st 405.488 A 0.15671
AFFX-BioDn-3_st 390.26 A 0.0726999

Total number of rows: 12620

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675090_PN44_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675090_PN44_u95bmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675090_PN44_u95bmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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