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Sample GSM1675126 Query DataSets for GSM1675126
Status Public on May 06, 2015
Title becic-00235: PN60: HG_U95B
Sample type RNA
 
Source name P60_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 51.2945 A 0.737173
AFFX-MurIL10_at 52.4518 A 0.712257
AFFX-MurIL4_at 76.6035 A 0.574038
AFFX-MurFAS_at 45.1185 A 0.574038
AFFX-BioB-5_at 4041.77 P 0.000581214
AFFX-BioB-M_at 4274.17 P 5.16732e-05
AFFX-BioB-3_at 3307.06 P 9.4506e-05
AFFX-BioC-5_at 12374.2 P 6.02111e-05
AFFX-BioC-3_at 10459.9 P 4.42873e-05
AFFX-BioDn-5_at 14153.8 P 4.42873e-05
AFFX-BioDn-3_at 38193.9 P 4.42873e-05
AFFX-CreX-5_at 124803 P 4.42873e-05
AFFX-CreX-3_at 114244 P 4.42873e-05
AFFX-BioB-5_st 56.5666 A 0.425962
AFFX-BioB-M_st 432.265 A 0.287743
AFFX-BioB-3_st 186.614 A 0.617401
AFFX-BioC-5_st 53.8122 A 0.868639
AFFX-BioC-3_st 118.054 A 0.368438
AFFX-BioDn-5_st 590.428 A 0.108979
AFFX-BioDn-3_st 707.887 P 0.0396608

Total number of rows: 12620

Table truncated, full table size 349 Kbytes.




Supplementary file Size Download File type/resource
GSM1675126_PN60_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675126_PN60_u95bmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675126_PN60_u95bmas5.CHP.txt.gz 128.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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