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Sample GSM1675135 Query DataSets for GSM1675135
Status Public on May 06, 2015
Title becic-00235: PN63: HG_U95B
Sample type RNA
 
Source name P63_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 125.203 A 0.544587
AFFX-MurIL10_at 116.496 A 0.39692
AFFX-MurIL4_at 21.8136 A 0.574038
AFFX-MurFAS_at 102.539 A 0.250796
AFFX-BioB-5_at 793.071 P 0.00179591
AFFX-BioB-M_at 771.281 P 0.000581214
AFFX-BioB-3_at 474.557 P 0.0113844
AFFX-BioC-5_at 2389.78 P 0.000126798
AFFX-BioC-3_at 2484.52 P 4.42873e-05
AFFX-BioDn-5_at 3142.61 P 5.16732e-05
AFFX-BioDn-3_at 7875.72 P 7.00668e-05
AFFX-CreX-5_at 24331.2 P 4.42873e-05
AFFX-CreX-3_at 33752 P 4.42873e-05
AFFX-BioB-5_st 28.1572 A 0.470241
AFFX-BioB-M_st 151.591 A 0.699394
AFFX-BioB-3_st 46.335 A 0.891021
AFFX-BioC-5_st 12.7323 A 0.891021
AFFX-BioC-3_st 16.6561 A 0.712257
AFFX-BioDn-5_st 38.584 A 0.382599
AFFX-BioDn-3_st 324.695 A 0.0956669

Total number of rows: 12620

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675135_PN63_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675135_PN63_u95bmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675135_PN63_u95bmas5.CHP.txt.gz 127.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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