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Sample GSM1675141 Query DataSets for GSM1675141
Status Public on May 06, 2015
Title becic-00235: PN65: HG_U95B
Sample type RNA
 
Source name P65_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI yes, ECI multifocal, SVI yes, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 36.7424 A 0.686277
AFFX-MurIL10_at 69.8191 A 0.724854
AFFX-MurIL4_at 7.20827 A 0.891021
AFFX-MurFAS_at 43.4873 A 0.686277
AFFX-BioB-5_at 479.871 M 0.0429619
AFFX-BioB-M_at 1070.79 P 0.0020226
AFFX-BioB-3_at 499.924 P 0.00687065
AFFX-BioC-5_at 2055.29 P 0.000126798
AFFX-BioC-3_at 1545.13 P 8.14279e-05
AFFX-BioDn-5_at 1462.85 P 0.000224668
AFFX-BioDn-3_at 9894.13 P 8.14279e-05
AFFX-CreX-5_at 19458.7 P 4.42873e-05
AFFX-CreX-3_at 30237.8 P 4.42873e-05
AFFX-BioB-5_st 133.912 A 0.455413
AFFX-BioB-M_st 71.6803 A 0.794268
AFFX-BioB-3_st 58.0487 A 0.834139
AFFX-BioC-5_st 34.0163 A 0.834139
AFFX-BioC-3_st 22.8567 A 0.794268
AFFX-BioDn-5_st 179.055 A 0.327079
AFFX-BioDn-3_st 345.73 A 0.108979

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675141_PN65_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675141_PN65_u95bmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675141_PN65_u95bmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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