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Sample GSM1675151 Query DataSets for GSM1675151
Status Public on May 06, 2015
Title becic-00235: PN68: HG_U95B
Sample type RNA
 
Source name P68_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 31.1236 A 0.949771
AFFX-MurIL10_at 24.5956 A 0.891041
AFFX-MurIL4_at 7.10814 A 0.993129
AFFX-MurFAS_at 23.837 A 0.843268
AFFX-BioB-5_at 1220.02 P 0.00227496
AFFX-BioB-M_at 2014.92 P 0.000195116
AFFX-BioB-3_at 971.726 P 0.000753643
AFFX-BioC-5_at 3376.74 P 8.14279e-05
AFFX-BioC-3_at 2768.62 P 5.16732e-05
AFFX-BioDn-5_at 2339.45 P 4.42873e-05
AFFX-BioDn-3_at 14634.7 P 7.00668e-05
AFFX-CreX-5_at 27141.3 P 4.42873e-05
AFFX-CreX-3_at 44005 P 4.42873e-05
AFFX-BioB-5_st 153.448 A 0.327079
AFFX-BioB-M_st 167.922 A 0.772364
AFFX-BioB-3_st 32.6698 A 0.932322
AFFX-BioC-5_st 31.6509 A 0.868639
AFFX-BioC-3_st 19.7164 A 0.843268
AFFX-BioDn-5_st 339.857 A 0.139482
AFFX-BioDn-3_st 248.408 A 0.313723

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675151_PN68_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675151_PN68_u95bmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675151_PN68_u95bmas5.CHP.txt.gz 129.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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