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Sample GSM1675160 Query DataSets for GSM1675160
Status Public on May 06, 2015
Title becic-00235: PN71: HG_U95B
Sample type RNA
 
Source name P71_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 24.192 A 0.916408
AFFX-MurIL10_at 25.4622 A 0.860518
AFFX-MurIL4_at 9.85494 A 0.860518
AFFX-MurFAS_at 18.6853 A 0.814869
AFFX-BioB-5_at 923.323 P 0.00179591
AFFX-BioB-M_at 2500.69 P 0.000258358
AFFX-BioB-3_at 1500.75 P 0.000224668
AFFX-BioC-5_at 4170.97 P 0.000195116
AFFX-BioC-3_at 2689.32 P 8.14279e-05
AFFX-BioDn-5_at 2685.03 P 4.42873e-05
AFFX-BioDn-3_at 16367.2 P 7.00668e-05
AFFX-CreX-5_at 27495.4 P 4.42873e-05
AFFX-CreX-3_at 42178.3 P 4.42873e-05
AFFX-BioB-5_st 81.1216 A 0.544587
AFFX-BioB-M_st 44.7894 A 0.737173
AFFX-BioB-3_st 140.922 A 0.737173
AFFX-BioC-5_st 49.7447 A 0.824672
AFFX-BioC-3_st 15.8539 A 0.897835
AFFX-BioDn-5_st 290.161 A 0.250796
AFFX-BioDn-3_st 342.008 A 0.0835735

Total number of rows: 12620

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675160_PN71_U95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675160_PN71_U95bmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675160_PN71_U95bmas5.CHP.txt.gz 129.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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