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Sample GSM1675187 Query DataSets for GSM1675187
Status Public on May 06, 2015
Title becic-00235: PN81: HG_U95B
Sample type RNA
 
Source name P81_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T4, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI yes, SVI yes, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 336.962 A 0.354453
AFFX-MurIL10_at 65.6851 A 0.699394
AFFX-MurIL4_at 24.3676 A 0.953518
AFFX-MurFAS_at 28.3885 A 0.804734
AFFX-BioB-5_at 1287.57 P 0.00359458
AFFX-BioB-M_at 2476.91 P 0.000340305
AFFX-BioB-3_at 1309.88 P 0.00110197
AFFX-BioC-5_at 4253.55 P 0.00010954
AFFX-BioC-3_at 3421.47 P 5.16732e-05
AFFX-BioDn-5_at 3109.95 P 4.42873e-05
AFFX-BioDn-3_at 17565.1 P 6.02111e-05
AFFX-CreX-5_at 31744.6 P 4.42873e-05
AFFX-CreX-3_at 48791.2 P 5.16732e-05
AFFX-BioB-5_st 183.584 A 0.5
AFFX-BioB-M_st 288.115 A 0.440646
AFFX-BioB-3_st 65.3121 A 0.916408
AFFX-BioC-5_st 40.158 A 0.953518
AFFX-BioC-3_st 98.4052 A 0.659352
AFFX-BioDn-5_st 304.572 A 0.300606
AFFX-BioDn-3_st 337.232 A 0.139462

Total number of rows: 12620

Table truncated, full table size 348 Kbytes.




Supplementary file Size Download File type/resource
GSM1675187_PN81_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675187_PN81_u95bmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675187_PN81_u95bmas5.CHP.txt.gz 129.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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