NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675207 Query DataSets for GSM1675207
Status Public on May 06, 2015
Title becic-00235: PN88: HG_U95B
Sample type RNA
 
Source name P88_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 46.2543 A 0.804734
AFFX-MurIL10_at 96.8638 A 0.559354
AFFX-MurIL4_at 11.5928 A 0.834139
AFFX-MurFAS_at 35.5028 A 0.712257
AFFX-BioB-5_at 633.649 P 0.0200219
AFFX-BioB-M_at 999.073 P 0.000753643
AFFX-BioB-3_at 564.33 P 0.0182806
AFFX-BioC-5_at 1974.77 P 0.000296708
AFFX-BioC-3_at 1479.56 P 5.16732e-05
AFFX-BioDn-5_at 1332.53 P 0.000224668
AFFX-BioDn-3_at 9592.67 P 9.4506e-05
AFFX-CreX-5_at 15428.7 P 4.42873e-05
AFFX-CreX-3_at 27096.2 P 4.42873e-05
AFFX-BioB-5_st 123.477 A 0.287743
AFFX-BioB-M_st 121.782 A 0.631562
AFFX-BioB-3_st 40.6354 A 0.891021
AFFX-BioC-5_st 19.5279 A 0.945787
AFFX-BioC-3_st 25.7155 A 0.5
AFFX-BioDn-5_st 279.045 A 0.239063
AFFX-BioDn-3_st 373.596 P 0.0309764

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675207_PN88_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675207_PN88_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675207_PN88_u95bmas5.CHP.txt.gz 128.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap