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Sample GSM1675210 Query DataSets for GSM1675210
Status Public on May 06, 2015
Title becic-00235: PN90: HG_U95B
Sample type RNA
 
Source name P90_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 180.631 A 0.470241
AFFX-MurIL10_at 104.764 A 0.574038
AFFX-MurIL4_at 44.5241 A 0.60308
AFFX-MurFAS_at 132.309 A 0.185131
AFFX-BioB-5_at 1324.38 P 0.000972149
AFFX-BioB-M_at 2590.21 P 7.00668e-05
AFFX-BioB-3_at 1119.86 P 0.000224668
AFFX-BioC-5_at 4256.09 P 7.00668e-05
AFFX-BioC-3_at 3514.28 P 5.16732e-05
AFFX-BioDn-5_at 2964.47 P 4.42873e-05
AFFX-BioDn-3_at 17474.3 P 4.42873e-05
AFFX-CreX-5_at 33579.5 P 4.42873e-05
AFFX-CreX-3_at 50149.3 P 4.42873e-05
AFFX-BioB-5_st 28.3801 A 0.60308
AFFX-BioB-M_st 54.493 A 0.712257
AFFX-BioB-3_st 40.7637 A 0.824672
AFFX-BioC-5_st 30.667 A 0.891021
AFFX-BioC-3_st 112.153 A 0.340661
AFFX-BioDn-5_st 144.833 A 0.300606
AFFX-BioDn-3_st 229.176 A 0.108979

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675210_PN90_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675210_PN90_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675210_PN90_u95bmas5.CHP.txt.gz 128.3 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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