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Sample GSM1675216 Query DataSets for GSM1675216
Status Public on May 06, 2015
Title becic-00235: PN92: HG_U95B
Sample type RNA
 
Source name P92_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM Mx
organismpart: Prostate
histology: ALI no, ECI no, SVI no, SMI focal
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 45.9174 A 0.617401
AFFX-MurIL10_at 20.1062 A 0.659339
AFFX-MurIL4_at 23.5024 A 0.672921
AFFX-MurFAS_at 15.2214 A 0.794268
AFFX-BioB-5_at 861.011 P 0.000753643
AFFX-BioB-M_at 2111.47 P 0.000126798
AFFX-BioB-3_at 960.945 P 0.000753643
AFFX-BioC-5_at 3121.91 P 8.14279e-05
AFFX-BioC-3_at 2293.38 P 5.16732e-05
AFFX-BioDn-5_at 2541.86 P 7.00668e-05
AFFX-BioDn-3_at 13494 P 6.02111e-05
AFFX-CreX-5_at 22222 P 4.42873e-05
AFFX-CreX-3_at 37954.2 P 4.42873e-05
AFFX-BioB-5_st 46.7131 A 0.48511
AFFX-BioB-M_st 41.6437 A 0.672921
AFFX-BioB-3_st 30.7348 A 0.868639
AFFX-BioC-5_st 14.0079 A 0.957038
AFFX-BioC-3_st 10.0055 A 0.659339
AFFX-BioDn-5_st 184.333 A 0.275146
AFFX-BioDn-3_st 182.651 A 0.116113

Total number of rows: 12620

Table truncated, full table size 354 Kbytes.




Supplementary file Size Download File type/resource
GSM1675216_PN92_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675216_PN92_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675216_PN92_u95bmas5.CHP.txt.gz 127.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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