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Sample GSM1675248 Query DataSets for GSM1675248
Status Public on May 06, 2015
Title becic-00235: PT16: HG_U95B
Sample type RNA
 
Source name P16_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 21.5338 A 0.760937
AFFX-MurIL10_at 119.044 A 0.425962
AFFX-MurIL4_at 12.7199 A 0.883887
AFFX-MurFAS_at 35.23 A 0.659339
AFFX-BioB-5_at 2280.38 P 0.000340305
AFFX-BioB-M_at 4879.59 P 9.4506e-05
AFFX-BioB-3_at 1260.58 P 0.000389797
AFFX-BioC-5_at 4894.73 P 0.00010954
AFFX-BioC-3_at 4614.19 P 9.4506e-05
AFFX-BioDn-5_at 3535.03 P 5.16732e-05
AFFX-BioDn-3_at 23290.8 P 4.42873e-05
AFFX-CreX-5_at 55236.3 P 4.42873e-05
AFFX-CreX-3_at 66824.2 P 4.42873e-05
AFFX-BioB-5_st 320.633 A 0.0726999
AFFX-BioB-M_st 393.647 P 0.0182806
AFFX-BioB-3_st 441.886 M 0.0464816
AFFX-BioC-5_st 54.9631 A 0.699394
AFFX-BioC-3_st 236.941 A 0.0629293
AFFX-BioDn-5_st 606.777 A 0.0894781
AFFX-BioDn-3_st 1334.12 P 0.000581214

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675248_PT16_U95B.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675248_PT16_U95Bmas5.0.CHP.gz 2.0 Mb (ftp)(http) CHP
GSM1675248_PT16_U95Bmas5.0.CHP.txt.gz 128.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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