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Sample GSM1675272 Query DataSets for GSM1675272
Status Public on May 06, 2015
Title becic-00235: PT41: HG_U95B
Sample type RNA
 
Source name P41_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI yes, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 47.1087 A 0.814869
AFFX-MurIL10_at 83.2289 A 0.659339
AFFX-MurIL4_at 16.953 A 0.749204
AFFX-MurFAS_at 162.637 A 0.455413
AFFX-BioB-5_at 3427.89 P 0.000662269
AFFX-BioB-M_at 6620.35 P 5.16732e-05
AFFX-BioB-3_at 2944.16 P 5.16732e-05
AFFX-BioC-5_at 5333.46 P 8.14279e-05
AFFX-BioC-3_at 4384.67 P 5.16732e-05
AFFX-BioDn-5_at 4014.17 P 4.42873e-05
AFFX-BioDn-3_at 23734.9 P 6.02111e-05
AFFX-CreX-5_at 55912.7 P 4.42873e-05
AFFX-CreX-3_at 55584.4 P 4.42873e-05
AFFX-BioB-5_st 402.452 A 0.139482
AFFX-BioB-M_st 316.744 A 0.216524
AFFX-BioB-3_st 451.957 A 0.239063
AFFX-BioC-5_st 37.7537 A 0.897835
AFFX-BioC-3_st 21.9066 A 0.760937
AFFX-BioDn-5_st 503.703 M 0.0584438
AFFX-BioDn-3_st 604.285 P 0.00844047

Total number of rows: 12620

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675272_PT41_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675272_PT41_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675272_PT41_u95bmas5.CHP.txt.gz 127.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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