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Sample GSM1675278 Query DataSets for GSM1675278
Status Public on May 06, 2015
Title becic-00235: PT43: HG_U95B
Sample type RNA
 
Source name P43_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI yes, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 75.0181 A 0.834139
AFFX-MurIL10_at 74.6167 A 0.58862
AFFX-MurIL4_at 126.843 A 0.559359
AFFX-MurFAS_at 102.702 A 0.672921
AFFX-BioB-5_at 5538.9 P 0.000258358
AFFX-BioB-M_at 11607.4 P 4.42873e-05
AFFX-BioB-3_at 5299.16 P 4.42873e-05
AFFX-BioC-5_at 6890.08 P 5.16732e-05
AFFX-BioC-3_at 5547.15 P 4.42873e-05
AFFX-BioDn-5_at 5595.68 P 4.42873e-05
AFFX-BioDn-3_at 34023.8 P 6.02111e-05
AFFX-CreX-5_at 87082.2 P 4.42873e-05
AFFX-CreX-3_at 108267 P 4.42873e-05
AFFX-BioB-5_st 235.017 A 0.275146
AFFX-BioB-M_st 434.374 A 0.262827
AFFX-BioB-3_st 122.142 A 0.368438
AFFX-BioC-5_st 48.6107 A 0.949771
AFFX-BioC-3_st 19.352 A 0.852061
AFFX-BioDn-5_st 501.058 A 0.139482
AFFX-BioDn-3_st 917.395 P 0.0125468

Total number of rows: 12620

Table truncated, full table size 348 Kbytes.




Supplementary file Size Download File type/resource
GSM1675278_PT43_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675278_PT43_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675278_PT43_u95bmas5.CHP.txt.gz 128.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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