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Sample GSM1675312 Query DataSets for GSM1675312
Status Public on May 06, 2015
Title becic-00235: PT55: HG_U95B
Sample type RNA
 
Source name P55_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 21.7261 A 0.876428
AFFX-MurIL10_at 62.4343 A 0.631562
AFFX-MurIL4_at 6.08576 A 0.749204
AFFX-MurFAS_at 19.2838 A 0.659339
AFFX-BioB-5_at 3085.67 P 0.000509415
AFFX-BioB-M_at 5634.28 P 4.42873e-05
AFFX-BioB-3_at 1932.44 P 4.42873e-05
AFFX-BioC-5_at 3782.62 P 7.00668e-05
AFFX-BioC-3_at 2992.42 P 0.000126798
AFFX-BioDn-5_at 2788.66 P 6.02111e-05
AFFX-BioDn-3_at 16033.3 P 6.02111e-05
AFFX-CreX-5_at 37480.3 P 4.42873e-05
AFFX-CreX-3_at 43425.6 P 4.42873e-05
AFFX-BioB-5_st 189.016 A 0.175328
AFFX-BioB-M_st 233.161 A 0.354453
AFFX-BioB-3_st 158.744 A 0.48511
AFFX-BioC-5_st 19.4009 A 0.876428
AFFX-BioC-3_st 17.2072 A 0.574038
AFFX-BioDn-5_st 275.186 A 0.175328
AFFX-BioDn-3_st 705.452 P 0.0020226

Total number of rows: 12620

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675312_PT55_u95b.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM1675312_PT55_u95bmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675312_PT55_u95bmas5.CHP.txt.gz 127.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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