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Sample GSM1675336 Query DataSets for GSM1675336
Status Public on May 06, 2015
Title becic-00235: PT64: HG_U95B
Sample type RNA
 
Source name P64_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_5
diseasestaging: pT T2a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 48.9568 A 0.52976
AFFX-MurIL10_at 16.6745 A 0.659391
AFFX-MurIL4_at 32.5603 A 0.904333
AFFX-MurFAS_at 62.2796 A 0.617401
AFFX-BioB-5_at 2393.06 P 0.00110197
AFFX-BioB-M_at 2378.48 P 6.02111e-05
AFFX-BioB-3_at 1279.19 P 0.00010954
AFFX-BioC-5_at 4549.77 P 7.00668e-05
AFFX-BioC-3_at 4764.57 P 4.42873e-05
AFFX-BioDn-5_at 4829.51 P 4.42873e-05
AFFX-BioDn-3_at 13657 P 4.42873e-05
AFFX-CreX-5_at 44800.4 P 4.42873e-05
AFFX-CreX-3_at 55883.5 P 4.42873e-05
AFFX-BioB-5_st 179.281 A 0.327079
AFFX-BioB-M_st 44.195 A 0.783476
AFFX-BioB-3_st 27.1355 A 0.963431
AFFX-BioC-5_st 50.6832 A 0.783476
AFFX-BioC-3_st 88.4726 A 0.544587
AFFX-BioDn-5_st 206.772 A 0.227636
AFFX-BioDn-3_st 270.239 A 0.123552

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675336_PT64_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675336_PT64_u95bmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675336_PT64_u95bmas5.CHP.txt.gz 129.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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