NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675339 Query DataSets for GSM1675339
Status Public on May 06, 2015
Title becic-00235: PT65: HG_U95B
Sample type RNA
 
Source name P65_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI yes, ECI multifocal, SVI yes, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 17.6949 A 0.868639
AFFX-MurIL10_at 66.5654 A 0.659339
AFFX-MurIL4_at 40.1179 A 0.712274
AFFX-MurFAS_at 61.2198 A 0.58862
AFFX-BioB-5_at 1176.25 P 0.00110197
AFFX-BioB-M_at 2292.93 P 0.000126798
AFFX-BioB-3_at 1136.03 P 0.000389797
AFFX-BioC-5_at 3353.3 P 9.4506e-05
AFFX-BioC-3_at 3032.77 P 4.42873e-05
AFFX-BioDn-5_at 2602.35 P 6.02111e-05
AFFX-BioDn-3_at 16207.1 P 5.16732e-05
AFFX-CreX-5_at 28579.3 P 4.42873e-05
AFFX-CreX-3_at 42660.2 P 4.42873e-05
AFFX-BioB-5_st 23.8326 A 0.737173
AFFX-BioB-M_st 179.566 A 0.559354
AFFX-BioB-3_st 64.3467 A 0.772364
AFFX-BioC-5_st 50.422 A 0.783476
AFFX-BioC-3_st 142.457 A 0.48511
AFFX-BioDn-5_st 471.115 A 0.108979
AFFX-BioDn-3_st 518.666 A 0.108979

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675339_PT65_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675339_PT65_u95bmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675339_PT65_u95bmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap