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Sample GSM1675342 Query DataSets for GSM1675342
Status Public on May 06, 2015
Title becic-00235: PT66: HG_U95B
Sample type RNA
 
Source name P66_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_8
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI yes, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 35.197 A 0.749204
AFFX-MurIL10_at 132.235 A 0.559354
AFFX-MurIL4_at 17.2254 A 0.891041
AFFX-MurFAS_at 70.3442 A 0.52976
AFFX-BioB-5_at 801.363 P 0.00762003
AFFX-BioB-M_at 2088.59 P 0.000445901
AFFX-BioB-3_at 999.311 P 0.00499819
AFFX-BioC-5_at 3103.52 P 0.000126798
AFFX-BioC-3_at 2633.04 P 6.02111e-05
AFFX-BioDn-5_at 2408.2 P 6.02111e-05
AFFX-BioDn-3_at 17026.9 P 7.00668e-05
AFFX-CreX-5_at 33122.5 P 4.42873e-05
AFFX-CreX-3_at 47203.8 P 4.42873e-05
AFFX-BioB-5_st 116.769 A 0.368438
AFFX-BioB-M_st 56.077 A 0.772364
AFFX-BioB-3_st 47.3369 A 0.921998
AFFX-BioC-5_st 40.1405 A 0.876428
AFFX-BioC-3_st 37.5183 A 0.544587
AFFX-BioDn-5_st 217.45 A 0.227636
AFFX-BioDn-3_st 1596.73 P 0.00618711

Total number of rows: 12620

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675342_PT66_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675342_PT66_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675342_PT66_u95bmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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