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Sample GSM1675348 Query DataSets for GSM1675348
Status Public on May 06, 2015
Title becic-00235: PT68: HG_U95B
Sample type RNA
 
Source name P68_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 43.341 A 0.783476
AFFX-MurIL10_at 35.4056 A 0.814869
AFFX-MurIL4_at 109.06 A 0.659339
AFFX-MurFAS_at 24.7089 A 0.852061
AFFX-BioB-5_at 1273.24 P 0.0020226
AFFX-BioB-M_at 2421.82 P 0.000340305
AFFX-BioB-3_at 1115.92 P 0.0044838
AFFX-BioC-5_at 3960.2 P 0.00010954
AFFX-BioC-3_at 3547.62 P 5.16732e-05
AFFX-BioDn-5_at 2483.73 P 5.16732e-05
AFFX-BioDn-3_at 19305.8 P 7.00668e-05
AFFX-CreX-5_at 35660.4 P 4.42873e-05
AFFX-CreX-3_at 51411.5 P 4.42873e-05
AFFX-BioB-5_st 85.5088 A 0.574038
AFFX-BioB-M_st 56.0772 A 0.834139
AFFX-BioB-3_st 46.5141 A 0.963431
AFFX-BioC-5_st 32.7748 A 0.932322
AFFX-BioC-3_st 18.4906 A 0.783476
AFFX-BioDn-5_st 97.3978 A 0.41138
AFFX-BioDn-3_st 452.291 A 0.313723

Total number of rows: 12620

Table truncated, full table size 348 Kbytes.




Supplementary file Size Download File type/resource
GSM1675348_PT68_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675348_PT68_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675348_PT68_u95bmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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