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Sample GSM1675365 Query DataSets for GSM1675365
Status Public on May 06, 2015
Title becic-00235: PT74: HG_U95B
Sample type RNA
 
Source name P74_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_8
diseasestaging: pT T3a, pN N1, pM MX
organismpart: Prostate
histology: ALI no, ECI multifocal, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 69.4995 A 0.631562
AFFX-MurIL10_at 95.6367 A 0.686277
AFFX-MurIL4_at 91.2719 A 0.645547
AFFX-MurFAS_at 21.4286 A 0.760937
AFFX-BioB-5_at 807.317 P 0.00401721
AFFX-BioB-M_at 1726.13 P 0.000340305
AFFX-BioB-3_at 1000.87 P 0.000856509
AFFX-BioC-5_at 3301.1 P 0.000195116
AFFX-BioC-3_at 1924.2 P 8.14279e-05
AFFX-BioDn-5_at 2089.46 P 8.14279e-05
AFFX-BioDn-3_at 12541 P 7.00668e-05
AFFX-CreX-5_at 23077.5 P 4.42873e-05
AFFX-CreX-3_at 37015.9 P 4.42873e-05
AFFX-BioB-5_st 45.9376 A 0.58862
AFFX-BioB-M_st 56.6086 A 0.760937
AFFX-BioB-3_st 37.4616 A 0.904333
AFFX-BioC-5_st 21.7329 A 0.897835
AFFX-BioC-3_st 127.986 A 0.368438
AFFX-BioDn-5_st 271.694 A 0.175328
AFFX-BioDn-3_st 336.648 M 0.0584438

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675365_PT74_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675365_PT74_u95bmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675365_PT74_u95bmas5.CHP.txt.gz 129.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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