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Sample GSM1675386 Query DataSets for GSM1675386
Status Public on May 06, 2015
Title becic-00235: PT84: HG_U95B
Sample type RNA
 
Source name P84_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T3b, pN N1, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI yes, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 31.6444 A 0.883887
AFFX-MurIL10_at 14.3165 A 0.904333
AFFX-MurIL4_at 32.5163 A 0.910522
AFFX-MurFAS_at 34.2551 A 0.843268
AFFX-BioB-5_at 1049.56 P 0.0012475
AFFX-BioB-M_at 2077.47 P 6.02111e-05
AFFX-BioB-3_at 1220.44 P 0.000509415
AFFX-BioC-5_at 3757.7 P 7.00668e-05
AFFX-BioC-3_at 2741.7 P 7.00668e-05
AFFX-BioDn-5_at 2123.55 P 5.16732e-05
AFFX-BioDn-3_at 14966.8 P 4.42873e-05
AFFX-CreX-5_at 27871.1 P 4.42873e-05
AFFX-CreX-3_at 46211 P 4.42873e-05
AFFX-BioB-5_st 116.706 A 0.368438
AFFX-BioB-M_st 140.033 A 0.544587
AFFX-BioB-3_st 42.9362 A 0.843268
AFFX-BioC-5_st 61.8536 A 0.699394
AFFX-BioC-3_st 94.2848 A 0.52976
AFFX-BioDn-5_st 226.863 A 0.227636
AFFX-BioDn-3_st 264.059 A 0.108979

Total number of rows: 12620

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675386_PT84_u95b.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675386_PT84_u95bmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675386_PT84_u95bmas5.CHP.txt.gz 129.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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