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Sample GSM1675419 Query DataSets for GSM1675419
Status Public on May 06, 2015
Title becic-00235: PT96: HG_U95B
Sample type RNA
 
Source name P96_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI multifocal, SVI yes, SMI extensive
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 230.242 A 0.48511
AFFX-MurIL10_at 26.8246 A 0.724854
AFFX-MurIL4_at 16.1298 A 0.574038
AFFX-MurFAS_at 29.2913 A 0.574038
AFFX-BioB-5_at 1420.27 P 0.000753643
AFFX-BioB-M_at 3119.39 P 4.42873e-05
AFFX-BioB-3_at 1595.93 P 0.000169227
AFFX-BioC-5_at 4520.57 P 6.02111e-05
AFFX-BioC-3_at 3727.83 P 4.42873e-05
AFFX-BioDn-5_at 4084.49 P 5.16732e-05
AFFX-BioDn-3_at 17554.6 P 5.16732e-05
AFFX-CreX-5_at 34244.6 P 4.42873e-05
AFFX-CreX-3_at 49094.3 P 4.42873e-05
AFFX-BioB-5_st 112.599 A 0.425962
AFFX-BioB-M_st 52.071 A 0.645547
AFFX-BioB-3_st 43.8374 A 0.883887
AFFX-BioC-5_st 24.3224 A 0.876428
AFFX-BioC-3_st 29.5605 A 0.645547
AFFX-BioDn-5_st 354.367 A 0.185131
AFFX-BioDn-3_st 449.296 M 0.050229

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675419_PT96_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675419_PT96_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675419_PT96_u95bmas5.CHP.txt.gz 127.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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