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Sample GSM1675422 Query DataSets for GSM1675422
Status Public on May 06, 2015
Title becic-00235: PT97: HG_U95B
Sample type RNA
 
Source name P97_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 63.6615 A 0.712257
AFFX-MurIL10_at 57.3654 A 0.52976
AFFX-MurIL4_at 70.201 A 0.227636
AFFX-MurFAS_at 23.6037 A 0.440646
AFFX-BioB-5_at 2385.05 P 0.000753643
AFFX-BioB-M_at 4314.57 P 0.00010954
AFFX-BioB-3_at 2010.66 P 0.000340305
AFFX-BioC-5_at 5666.29 P 7.00668e-05
AFFX-BioC-3_at 5312.97 P 5.16732e-05
AFFX-BioDn-5_at 4707.19 P 4.42873e-05
AFFX-BioDn-3_at 25209.6 P 4.42873e-05
AFFX-CreX-5_at 45711.8 P 4.42873e-05
AFFX-CreX-3_at 56533.1 P 4.42873e-05
AFFX-BioB-5_st 92.9391 A 0.340661
AFFX-BioB-M_st 156.35 A 0.39692
AFFX-BioB-3_st 63.7809 A 0.794268
AFFX-BioC-5_st 23.465 A 0.910522
AFFX-BioC-3_st 18.8179 A 0.631562
AFFX-BioDn-5_st 214.45 A 0.275146
AFFX-BioDn-3_st 265.933 P 0.026111

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675422_PT97_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675422_PT97_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675422_PT97_u95bmas5.CHP.txt.gz 127.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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