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Sample GSM1675431 Query DataSets for GSM1675431
Status Public on May 06, 2015
Title becic-00235: PD002: HG_U95B
Sample type RNA
 
Source name D002_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 41
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 12.3515 A 0.916408
AFFX-MurIL10_at 66.4012 A 0.617401
AFFX-MurIL4_at 43.3048 A 0.5
AFFX-MurFAS_at 115.71 A 0.354453
AFFX-BioB-5_at 1802.09 P 0.000509415
AFFX-BioB-M_at 3703.26 P 5.16732e-05
AFFX-BioB-3_at 1366.09 P 0.000389797
AFFX-BioC-5_at 6026.41 P 6.02111e-05
AFFX-BioC-3_at 5008.27 P 5.16732e-05
AFFX-BioDn-5_at 4876.26 P 4.42873e-05
AFFX-BioDn-3_at 26772.4 P 5.16732e-05
AFFX-CreX-5_at 54741.4 P 4.42873e-05
AFFX-CreX-3_at 72772.8 P 4.42873e-05
AFFX-BioB-5_st 192.405 A 0.185131
AFFX-BioB-M_st 216.136 A 0.737173
AFFX-BioB-3_st 62.6343 A 0.760937
AFFX-BioC-5_st 58.776 A 0.659339
AFFX-BioC-3_st 20.7988 A 0.699394
AFFX-BioDn-5_st 169.372 A 0.313723
AFFX-BioDn-3_st 487.411 P 0.0182806

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675431_PD002_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675431_PD002_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675431_PD002_u95bmas5.CHP.txt.gz 127.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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