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Sample GSM1675437 Query DataSets for GSM1675437
Status Public on May 06, 2015
Title becic-00235: PD004: HG_U95B
Sample type RNA
 
Source name D004_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 19
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 62.8043 A 0.699394
AFFX-MurIL10_at 37.2032 A 0.672921
AFFX-MurIL4_at 8.96163 A 0.814869
AFFX-MurFAS_at 78.9214 A 0.327079
AFFX-BioB-5_at 1362.1 P 0.0012475
AFFX-BioB-M_at 3217.86 P 4.42873e-05
AFFX-BioB-3_at 1273.3 P 0.000126798
AFFX-BioC-5_at 5004.49 P 6.02111e-05
AFFX-BioC-3_at 3951.4 P 7.00668e-05
AFFX-BioDn-5_at 3704.9 P 4.42873e-05
AFFX-BioDn-3_at 20258.5 P 4.42873e-05
AFFX-CreX-5_at 42288 P 4.42873e-05
AFFX-CreX-3_at 54161.4 P 4.42873e-05
AFFX-BioB-5_st 155.413 A 0.250796
AFFX-BioB-M_st 149.217 A 0.559354
AFFX-BioB-3_st 79.2497 A 0.724854
AFFX-BioC-5_st 14.8211 A 0.876428
AFFX-BioC-3_st 33.7236 A 0.470241
AFFX-BioDn-5_st 277.199 A 0.185131
AFFX-BioDn-3_st 773.806 P 0.00618711

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675437_PD004_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675437_PD004_u95bmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675437_PD004_u95bmas5.CHP.txt.gz 127.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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