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GEO accession:
Sample GSM1679
Query DataSets for GSM1679
Status
Public on May 18, 2002
Title
rat hippocampus
Sample type
SAGE
Anchor
NlaIII
Tag Count
76790
Tag Length
10
Source name
rat hippocampus (Wistar)
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
SAGE profile of rat hippocampus mRNA from Wistar rats.
Keywords = rat, hippocampus, SAGE, expression profile, transcriptome
Submission date
May 16, 2002
Last update date
Nov 19, 2008
Contact name
Nicole Datson
E-mail(s)
datson_n@lacdr.leidenuniv.nl
Phone
(+31)71-5276222
Organization name
Leiden University
Department
Medical Pharmacology
Street address
City
Leiden
ZIP/Postal code
2333 CC
Country
Netherlands
Platform ID
GPL23
Series (1)
GSE25750
SAGE profile of rat hippocampus mRNA from Wistar rats
Data table header descriptions
TAG
10 bp DNA sequence representing SAGE tag
COUNT
number of times tag is encountered
TPM
tags per million
Data table
TAG
COUNT
TPM
GATGCCCCCC
2087
27178.02
ATAACACATA
1596
20783.96
AATCAACCCG
1369
17827.84
ATACTGACAC
1351
17593.44
AATCGGAGGC
778
10131.53
GTGGCTCACA
768
10001.30
CAAACATCCA
469
6107.57
AAAAATCATC
374
4870.43
AGCCATCCCT
285
3711.42
ACTCTCAGCC
284
3698.40
AGCGATTCAA
229
2982.16
GCTTCATCCA
227
2956.11
ACAAACCTCG
222
2891.00
ATGACTATTA
192
2500.33
CTGGGGCATC
190
2474.28
CACCCATACC
189
2461.26
TCTTCGTGAC
185
2409.17
CCAATGGTCC
184
2396.15
TCATTAGTCA
169
2200.81
CTAAGGAAGT
164
2135.69
Total number of rows:
28748
Table truncated, full table size
535 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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