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Sample GSM1694107 Query DataSets for GSM1694107
Status Public on May 22, 2015
Title IL-4-treated macrophages transfected with miR-130-3p mimics-1
Sample type RNA
Source name IL-4-treated macrophages transfected with miR-130-3p mimics
Organism Homo sapiens
Characteristics donor id: healthy donor 1
tissue: buffy coats of peripheral blood
cell type: primary human monocyte-derived macrophages
transfected with: miR-130-3p mimics
treated with: 20ng/ml IL-4 for 24h
Treatment protocol Afterward, macrophages were transfected with control ASO, miR-142-5p ASO, control mimics or miR-130-3p mimics using lentiviral vectors. After 24 hr, the cells were treated with 20ng/ml IL-4 for 24h.
Growth protocol Peripheral blood monocytes from healthy donors were isolated by Ficoll density gradient centrifugation as previously described. Macrophages were obtained by culturing monocytes in DMEM medium supplemented with 10% heat inactivated human AB serum for 6 days.
Extracted molecule total RNA
Extraction protocol Total RNA was harvested using TRIzol (Invitrogen) mRNA was purified from total RNA after removal of rRNA (mRNA-ONLY™ Eukaryotic mRNA Isolation Kit, Epicentre).
Label Cy3
Label protocol each sample was amplified and transcribed into fluorescent cRNA along the entire length of the transcripts without 3’ bias utilizing a random priming method
Hybridization protocol Hybridization was performed by Agilent Gene Expression Hybridization Kit (Agilent p/n 5188-5242).
Scan protocol The slides were scanned with the Agilent DNA Microarray Scanner.
Description mRNA expression of IL-4-treated macrophages transfected with miR-130-3p mimics
Data processing Data was extracted using Agilent Feature Extraction software. Results were provided in the Raw Intensity.xls file. Normalization was performed using the Agilent GeneSpring GX v11.5.1.
After quantile normalization of the raw data,mRNAs that at least 2 out of 5 samples have flags in Present or Marginal (“All Targets Value”) were chosen for further data analysis. Differentially expressed mRNAs were identified through Fold Change filtering.
Submission date May 22, 2015
Last update date May 22, 2015
Contact name Shicheng Su
Phone 84-02-87332022
Organization name Sun-Yat-Sen Memorial Hospital
Street address 107 Yanjiang West Road
City Guangzhou
ZIP/Postal code 510120
Country China
Platform ID GPL13497
Series (2)
GSE59347 mRNA expression profile in IL-4-treated macrophages transfected with miR-142-5p ASO or miR-130a-3p mimics
GSE59349 The differential miRNA expression induces M2 macrophage polarization and mediates their profibrogenic effects

Data table header descriptions
VALUE normalized

Data table
GE_BrightCorner 14.865046
DarkCorner 2.3988457
A_23_P146146 5.6512885
A_23_P42935 9.464572
A_23_P117082 13.572097
A_23_P2683 11.424698
A_24_P358131 5.6498213
A_33_P3367647 6.3605676
A_23_P157316 8.124699
A_32_P14850 13.905247
A_23_P158596 9.159348
A_23_P350107 9.884995
A_23_P388190 11.4272785
A_23_P106544 13.162422
A_33_P3219745 3.504275
A_32_P85539 9.812112
A_23_P94998 10.909264
A_33_P3235677 2.5149605
A_23_P417014 5.23708
A_23_P103905 10.958515

Total number of rows: 34183

Table truncated, full table size 759 Kbytes.

Supplementary file Size Download File type/resource
GSM1694107_130-mimic-1-4.txt.gz 2.0 Mb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table

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