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Sample GSM169460 Query DataSets for GSM169460
Status Public on Apr 20, 2007
Title ESC_Zfx-null_Replicate2
Sample type RNA
 
Source name ESC Cultured in 15% KO + LIF without feeders
Organism Mus musculus
Characteristics Zfx-null TC1 ESC
Cultured in 15% KO + LIF without feeders
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy protocol
Label Biotin
Label protocol Ambion MessageAmp II aRNA protocol
Single-round amplification and labeling
 
Hybridization protocol Hybridization performed on a Affymetrix FS450/250 Fluidics Station using the FS450_0002 script.
Scan protocol Array scanning and raw data processing were done using
GCOS 1.4 software (Affymetrix)
Description Murine Zfx-null ESC Replicate2
Data processing Array scanning and raw data processing were done using
GCOS 1.4 software (Affymetrix)
 
Submission date Feb 19, 2007
Last update date Aug 28, 2018
Contact name Jose M Galan
Organization name Columbia University Medical Center
Street address 701 W 168th St Room 609
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL1261
Series (1)
GSE7069 Zfx controls the self-renewal of embryonic and hematopoietic stem cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE VALUE
ABS_CALL ABS_CALL
DETECTION P-VALUE DETECTION-P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 163.768 P 0.000509415
AFFX-BioB-M_at 210.067 P 7.00668e-05
AFFX-BioB-3_at 108.756 P 4.42873e-05
AFFX-BioC-5_at 535.788 P 8.14279e-05
AFFX-BioC-3_at 453.452 P 4.42873e-05
AFFX-BioDn-5_at 932.998 P 4.42873e-05
AFFX-BioDn-3_at 2281.19 P 0.000169227
AFFX-CreX-5_at 6041.07 P 5.16732e-05
AFFX-CreX-3_at 7178.12 P 4.42873e-05
AFFX-DapX-5_at 413.504 P 6.02111e-05
AFFX-DapX-M_at 674.721 P 0.000224668
AFFX-DapX-3_at 560.448 P 7.00668e-05
AFFX-LysX-5_at 44.3605 P 0.000296708
AFFX-LysX-M_at 92.2117 P 0.00179591
AFFX-LysX-3_at 119.208 P 4.42246e-05
AFFX-PheX-5_at 76.4402 P 0.0032123
AFFX-PheX-M_at 77.7791 P 0.00141043
AFFX-PheX-3_at 83.1187 P 0.000972149
AFFX-ThrX-5_at 79.0569 P 0.000753643
AFFX-ThrX-M_at 113.668 P 0.000258358

Total number of rows: 45101

Table truncated, full table size 1381 Kbytes.




Supplementary file Size Download File type/resource
GSM169460.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM169460.CHP.gz 242.7 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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