GEO help: Mouse over screen elements for information.
Status
Public on Dec 11, 2007
Title
Day 5 control 2
Sample type
RNA
Source name
rat lung, day5, ctrl
Organism
Rattus norvegicus Characteristics
Strain : SD
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day5, ctrl
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85 Series (1)
GSE7079 Chronic rat exposure to cigarette smoke
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-3_at
227.300000
P
0.000127
AFFX-BioB-3_st
5.900000
A
0.794268
AFFX-BioB-5_at
128.100000
P
0.006187
AFFX-BioB-5_st
31.600000
P
0.028457
AFFX-BioB-M_at
322.000000
P
0.000110
AFFX-BioB-M_st
28.600000
A
0.250796
AFFX-BioC-3_at
402.800000
P
0.000070
AFFX-BioC-3_st
3.200000
A
0.724854
AFFX-BioC-5_at
509.900000
P
0.000258
AFFX-BioC-5_st
1.300000
A
0.645547
AFFX-BioDn-3_at
2173.900000
P
0.000509
AFFX-BioDn-3_st
49.600000
M
0.050229
AFFX-BioDn-5_at
454.500000
P
0.000070
AFFX-BioDn-5_st
27.600000
A
0.216524
AFFX-CreX-3_at
6629.600000
P
0.000044
AFFX-CreX-3_st
20.600000
A
0.287743
AFFX-CreX-5_at
3445.500000
P
0.000044
AFFX-CreX-5_st
22.900000
A
0.123572
AFFX-DapX-3_at
4.400000
A
0.699394
AFFX-DapX-5_at
1.000000
A
0.631562
8799 296 Kbytes .Supplementary file Size Download File type/resource GSM170291.cel.gz
1.9 Mb
(ftp) (http) CEL
Processed data included within Sample table
