GEO help: Mouse over screen elements for information.
Status
Public on Dec 11, 2007
Title
Day 3 control 9
Sample type
RNA
Source name
rat lung, day3, ctrl
Organism
Rattus norvegicus Characteristics
Strain : SD
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day3, ctrl
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85 Series (1)
GSE7079 Chronic rat exposure to cigarette smoke
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-3_at
131.000000
P
0.000060
AFFX-BioB-3_st
4.400000
A
0.860518
AFFX-BioB-5_at
91.900000
P
0.013811
AFFX-BioB-5_st
25.700000
A
0.116113
AFFX-BioB-M_at
245.100000
P
0.000110
AFFX-BioB-M_st
19.400000
A
0.354453
AFFX-BioC-3_at
220.400000
P
0.000070
AFFX-BioC-3_st
1.500000
A
0.916408
AFFX-BioC-5_at
299.800000
P
0.000127
AFFX-BioC-5_st
3.100000
A
0.876428
AFFX-BioDn-3_at
1023.700000
P
0.000754
AFFX-BioDn-3_st
47.300000
M
0.054213
AFFX-BioDn-5_at
282.400000
P
0.000081
AFFX-BioDn-5_st
26.300000
A
0.095667
AFFX-CreX-3_at
4443.900000
P
0.000098
AFFX-CreX-3_st
22.400000
A
0.205732
AFFX-CreX-5_at
2703.100000
P
0.000044
AFFX-CreX-5_st
27.500000
P
0.026111
AFFX-DapX-3_at
1.500000
A
0.891021
AFFX-DapX-5_at
2.700000
A
0.250796
8799 296 Kbytes .Supplementary file Size Download File type/resource GSM170372.cel.gz
1.9 Mb
(ftp) (http) CEL
Processed data included within Sample table
