NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM170378 Query DataSets for GSM170378
Status Public on Dec 11, 2007
Title Day 42 control 6
Sample type RNA
 
Source name rat lung, day42, ctrl
Organism Rattus norvegicus
Characteristics Strain : SD
Gender : Male
Tissue : Lung
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description rat lung, day42, ctrl
Data processing The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
 
Submission date Feb 20, 2007
Last update date Dec 11, 2007
Contact name Christopher S Stevenson
Organization name Novartis Institutes for BioMedical Research
Department Respiratory Diseases
Street address Wimblehurst Road
City Horsham
ZIP/Postal code RH12 5AB
Country United Kingdom
 
Platform ID GPL85
Series (1)
GSE7079 Chronic rat exposure to cigarette smoke

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-3_at 153.900000 P 0.000044
AFFX-BioB-3_st 5.400000 A 0.794268
AFFX-BioB-5_at 104.000000 P 0.003212
AFFX-BioB-5_st 18.000000 A 0.147939
AFFX-BioB-M_at 253.100000 P 0.000044
AFFX-BioB-M_st 10.400000 A 0.544587
AFFX-BioC-3_at 297.800000 P 0.000060
AFFX-BioC-3_st 2.000000 A 0.834139
AFFX-BioC-5_at 414.800000 P 0.000081
AFFX-BioC-5_st 4.600000 A 0.876428
AFFX-BioDn-3_at 1593.500000 P 0.000081
AFFX-BioDn-3_st 59.600000 P 0.033677
AFFX-BioDn-5_at 353.300000 P 0.000060
AFFX-BioDn-5_st 42.200000 A 0.095667
AFFX-CreX-3_at 3097.600000 P 0.000044
AFFX-CreX-3_st 36.800000 A 0.123572
AFFX-CreX-5_at 2803.600000 P 0.000044
AFFX-CreX-5_st 25.500000 P 0.021902
AFFX-DapX-3_at 5.800000 A 0.699394
AFFX-DapX-5_at 5.800000 A 0.239063

Total number of rows: 8799

Table truncated, full table size 296 Kbytes.




Supplementary file Size Download File type/resource
GSM170378.cel.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap