GEO help: Mouse over screen elements for information.
Status
Public on Dec 11, 2007
Title
Day 112 smoke exposure 1
Sample type
RNA
Source name
rat lung, day112, smoke
Organism
Rattus norvegicus
Characteristics
Strain : SD Gender : Male Tissue : Lung
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day112, smoke
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85
Series (1)
GSE7079
Chronic rat exposure to cigarette smoke
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-3_at
88.700000
P
0.000390
AFFX-BioB-3_st
4.900000
A
0.814869
AFFX-BioB-5_at
64.400000
P
0.012547
AFFX-BioB-5_st
26.900000
A
0.078002
AFFX-BioB-M_at
119.800000
P
0.000509
AFFX-BioB-M_st
16.300000
A
0.368438
AFFX-BioC-3_at
146.900000
P
0.000070
AFFX-BioC-3_st
1.200000
A
0.916408
AFFX-BioC-5_at
226.600000
P
0.000110
AFFX-BioC-5_st
4.500000
A
0.932322
AFFX-BioDn-3_at
985.400000
P
0.000110
AFFX-BioDn-3_st
12.800000
A
0.396920
AFFX-BioDn-5_at
161.900000
P
0.000509
AFFX-BioDn-5_st
37.200000
A
0.131361
AFFX-CreX-3_at
2811.000000
P
0.000044
AFFX-CreX-3_st
4.400000
A
0.425962
AFFX-CreX-5_at
1499.600000
P
0.000044
AFFX-CreX-5_st
14.300000
A
0.216524
AFFX-DapX-3_at
1.300000
A
0.976071
AFFX-DapX-5_at
3.000000
A
0.287743
Total number of rows: 8799 Table truncated, full table size 295 Kbytes .Supplementary file
Size
Download
File type/resource
GSM170429.cel.gz
1.9 Mb
(ftp) (http)
CEL
Processed data included within Sample table