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Sample GSM170429 Query DataSets for GSM170429
Status Public on Dec 11, 2007
Title Day 112 smoke exposure 1
Sample type RNA
 
Source name rat lung, day112, smoke
Organism Rattus norvegicus
Characteristics Strain : SD
Gender : Male
Tissue : Lung
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description rat lung, day112, smoke
Data processing The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
 
Submission date Feb 20, 2007
Last update date Dec 11, 2007
Contact name Christopher S Stevenson
Organization name Novartis Institutes for BioMedical Research
Department Respiratory Diseases
Street address Wimblehurst Road
City Horsham
ZIP/Postal code RH12 5AB
Country United Kingdom
 
Platform ID GPL85
Series (1)
GSE7079 Chronic rat exposure to cigarette smoke

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-3_at 88.700000 P 0.000390
AFFX-BioB-3_st 4.900000 A 0.814869
AFFX-BioB-5_at 64.400000 P 0.012547
AFFX-BioB-5_st 26.900000 A 0.078002
AFFX-BioB-M_at 119.800000 P 0.000509
AFFX-BioB-M_st 16.300000 A 0.368438
AFFX-BioC-3_at 146.900000 P 0.000070
AFFX-BioC-3_st 1.200000 A 0.916408
AFFX-BioC-5_at 226.600000 P 0.000110
AFFX-BioC-5_st 4.500000 A 0.932322
AFFX-BioDn-3_at 985.400000 P 0.000110
AFFX-BioDn-3_st 12.800000 A 0.396920
AFFX-BioDn-5_at 161.900000 P 0.000509
AFFX-BioDn-5_st 37.200000 A 0.131361
AFFX-CreX-3_at 2811.000000 P 0.000044
AFFX-CreX-3_st 4.400000 A 0.425962
AFFX-CreX-5_at 1499.600000 P 0.000044
AFFX-CreX-5_st 14.300000 A 0.216524
AFFX-DapX-3_at 1.300000 A 0.976071
AFFX-DapX-5_at 3.000000 A 0.287743

Total number of rows: 8799

Table truncated, full table size 295 Kbytes.




Supplementary file Size Download File type/resource
GSM170429.cel.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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