GEO help: Mouse over screen elements for information.
Status
Public on Dec 11, 2007
Title
Day 112 smoke exposure 4
Sample type
RNA
Source name
rat lung, day112, smoke
Organism
Rattus norvegicus
Characteristics
Strain : SD Gender : Male Tissue : Lung
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day112, smoke
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85
Series (1)
GSE7079
Chronic rat exposure to cigarette smoke
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-3_at
111.100000
P
0.000258
AFFX-BioB-3_st
16.300000
A
0.699394
AFFX-BioB-5_at
14.900000
A
0.205732
AFFX-BioB-5_st
22.900000
P
0.007620
AFFX-BioB-M_at
176.800000
P
0.001593
AFFX-BioB-M_st
20.400000
P
0.013811
AFFX-BioC-3_at
175.600000
P
0.000127
AFFX-BioC-3_st
1.200000
A
0.794268
AFFX-BioC-5_at
296.400000
P
0.000110
AFFX-BioC-5_st
4.400000
A
0.868639
AFFX-BioDn-3_at
1283.600000
P
0.000060
AFFX-BioDn-3_st
29.300000
A
0.089478
AFFX-BioDn-5_at
253.300000
P
0.000147
AFFX-BioDn-5_st
17.000000
A
0.300606
AFFX-CreX-3_at
3714.400000
P
0.000044
AFFX-CreX-3_st
5.000000
A
0.313723
AFFX-CreX-5_at
1933.900000
P
0.000044
AFFX-CreX-5_st
17.000000
A
0.175328
AFFX-DapX-3_at
6.600000
A
0.772364
AFFX-DapX-5_at
3.400000
A
0.659339
Total number of rows: 8799 Table truncated, full table size 295 Kbytes .Supplementary file
Size
Download
File type/resource
GSM170432.cel.gz
1.9 Mb
(ftp) (http)
CEL
Processed data included within Sample table