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Status
Public on Dec 11, 2007
Title
Day 182 smoke exposure 8
Sample type
RNA
Source name
rat lung, day182, smoke
Organism
Rattus norvegicus Characteristics
Strain : SD
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day182, smoke
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85 Series (1)
GSE7079 Chronic rat exposure to cigarette smoke
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-3_at
104.300000
P
0.000258
AFFX-BioB-3_st
4.000000
A
0.834139
AFFX-BioB-5_at
64.700000
P
0.008440
AFFX-BioB-5_st
38.800000
M
0.042962
AFFX-BioB-M_at
188.300000
P
0.000052
AFFX-BioB-M_st
20.800000
A
0.131361
AFFX-BioC-3_at
151.900000
P
0.000070
AFFX-BioC-3_st
1.900000
A
0.852061
AFFX-BioC-5_at
252.000000
P
0.000110
AFFX-BioC-5_st
2.400000
A
0.932322
AFFX-BioDn-3_at
1559.600000
P
0.000081
AFFX-BioDn-3_st
32.600000
A
0.139482
AFFX-BioDn-5_at
346.400000
P
0.000060
AFFX-BioDn-5_st
34.200000
A
0.139482
AFFX-CreX-3_at
4389.700000
P
0.000044
AFFX-CreX-3_st
5.400000
A
0.300606
AFFX-CreX-5_at
3038.500000
P
0.000044
AFFX-CreX-5_st
17.400000
A
0.116113
AFFX-DapX-3_at
1.600000
A
0.883887
AFFX-DapX-5_at
5.500000
A
0.147939
8799 295 Kbytes .Supplementary file Size Download File type/resource GSM170451.cel.gz
2.0 Mb
(ftp) (http) CEL
Processed data included within Sample table
