|
| Status |
Public on Mar 04, 2016 |
| Title |
dESC_Yap1_KD1 |
| Sample type |
SRA |
| |
|
| Source name |
J1 ES cell_differentiated_Yap1_knockdown
|
| Organism |
Mus musculus |
| Characteristics |
cell type: mouse embryonic stem cells
passages: 5-7
strain: 129S4/SvJae
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNAs were extracted using Qiagen Rneasy plus mini kit
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Sequenced reads were mapped to mm9 whole genome using Tophat2 with default setting
FPKM values were calculated using Cuffdiff with default setting
Genome_build: mm9
Supplementary_files_format_and_content: text file include FPKM values for each Sample. Genes with FPKM value 0 all across the samples are excluded.
|
| |
|
| Submission date |
Jun 08, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Jonghwan Kim |
| E-mail(s) |
jybella@utexas.edu
|
| Phone |
512-232-8046
|
| Organization name |
University of Texas at Austin
|
| Department |
Department of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology
|
| Lab |
Kim Lab
|
| Street address |
2506 Speedway NMS 4.246
|
| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE69669 |
Roles of Yap1 in mouse embryonic stem cells |
|
| Relations |
| BioSample |
SAMN03765230 |
| SRA |
SRX1053783 |
