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Sample GSM170657 Query DataSets for GSM170657
Status Public on Feb 23, 2007
Title Cerebral cortex, technical replicate 2 at Oregon National Primate Research Center
Sample type RNA
 
Source name rhesus macaques cerebral cortex
Organism Macaca mulatta
Characteristics Tissue: cerebral cortex
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol Following fragmentation, the biotinylated cRNA were hybridized for 16 hr at 45C on GeneChip Rhesus Macaque Array
Scan protocol GeneChips were scanned on Affymetrix scanner 3000
Description Gene expression data from cerebral cortex
Data processing The data were analyzed with Robust Multichip Analysis (RMA) using MAS background correction and quantile normalization within the center.
 
Submission date Feb 21, 2007
Last update date Feb 22, 2007
Contact name Fenghai Duan
E-mail(s) fduan@stat.brown.edu
Phone 401-863-2175
Organization name Brown University
Department Biostatistics
Street address 121 S. Main Street
City Providence
State/province RI
ZIP/Postal code 02912
Country USA
 
Platform ID GPL3535
Series (1)
GSE7094 Expression data from 5 rhesus tissues at 3 centers

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity (with MAS Background correction)
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-3_at 6.946471812 P 0.000195157
AFFX-BioB-5_at 6.923692554 P 0.000662332
AFFX-BioB-M_at 7.235783982 P 7.01E-05
AFFX-BioC-3_at 8.493490574 P 5.17E-05
AFFX-BioC-5_at 8.248055574 P 6.02E-05
AFFX-BioDn-3_at 10.86549028 P 7.01E-05
AFFX-BioDn-5_at 9.493885082 P 4.43E-05
AFFX-CreX-3_at 11.97549184 P 4.43E-05
AFFX-CreX-5_at 11.65973581 P 5.17E-05
AFFX-DapX-3_at 4.12469501 A 0.969023668
AFFX-DapX-5_at 3.997340797 A 0.772363657
AFFX-DapX-M_at 4.727145589 A 0.749204408
AFFX-LysX-3_at 4.725405008 A 0.108978703
AFFX-LysX-5_at 3.982824509 A 0.603080402
AFFX-LysX-M_at 4.936971932 A 0.824671785
AFFX-Mmu-actin-3_s_at 12.62838768 P 0.001672877
AFFX-Mmu-actin-5_at 11.93641431 P 0.001672877
AFFX-Mmu-actin-M_at 12.07289162 P 0.001672877
AFFX-Mmu-actin-M_x_at 12.23663318 P 0.001672877
AFFX-Mmu-ef1a-3_x_at 13.05069549 P 0.001672877

Total number of rows: 52865

Table truncated, full table size 2442 Kbytes.




Supplementary file Size Download File type/resource
GSM170657.CEL.gz 4.7 Mb (ftp)(http) CEL

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