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Sample GSM1709439 Query DataSets for GSM1709439
Status Public on Jan 22, 2016
Title 20_E_3_S
Sample type RNA
Source name Lung tissue from COPD patient
Organism Homo sapiens
Characteristics emphysema: YES
gold stage: 3
tissue: Lung
Extracted molecule total RNA
Extraction protocol RNA later presserved tissue, RNA extracted with miRNeasy Mini Kit, Quigen
Label biotin
Label protocol cRNA amplification and biotin labeling was synthesized from 150 ng total RNA by means of cDNA synthesis followed by an in vitro transcription reaction in the presence of T7 RNA Polymerase and biotinylated nucleotide analog/ribonucleotide mix (3'IVT Express Kit, Affymetrix Inc, Santa Clara, CA)
Biotin-labeled cRNA was cleanup and quantified with magnetic beads and subsequently fragmented.
Hybridization protocol Hybridization was performed with GeneChip® Hybridization Wash and Stain Kit (Affymetrix Inc) according to manufactures instructions
Scan protocol GeneChips were scanned using the GeneChip®Scanner 3000 7G (Affymetrix Inc).
Description former smoker
Data processing Raw expression measures were summarized after background correction and normalization steps using the rma methodology in the affy package from the Bioconductor project.
Submission date Jun 12, 2015
Last update date Jan 22, 2016
Contact name Maria Rosa Faner
Organization name Fundaci├│ Privada Clinic
Department Cellex
Lab 606
Street address C/Casanova 143, planta 2A,
City Barcelona
State/province Barcelona
ZIP/Postal code 08036
Country Spain
Platform ID GPL13667
Series (1)
GSE69818 COPD lung tissue expression

Data table header descriptions
VALUE RMA summarized log2 values

Data table
11715100_at 4.972529615
11715101_s_at 4.680200209
11715102_x_at 4.50389099
11715103_x_at 5.622888282
11715104_s_at 4.39623589
11715105_at 4.321796827
11715106_x_at 4.611176781
11715107_s_at 4.636092999
11715108_x_at 5.123121021
11715109_at 4.057638873
11715110_at 4.334814911
11715111_s_at 5.008777647
11715112_at 5.85732412
11715113_x_at 5.537819206
11715114_x_at 5.224443248
11715115_s_at 3.607974733
11715116_s_at 3.971738217
11715117_x_at 3.548225218
11715118_s_at 5.416194277
11715119_s_at 7.849593102

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.

Supplementary file Size Download File type/resource
GSM1709439_20_alvarAgusti140413_Hg_U219_96_B04.CEL.gz 2.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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