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Sample GSM1709469 Query DataSets for GSM1709469
Status Public on Jan 22, 2016
Title 65_NE_2_L
Sample type RNA
Source name Lung tissue from COPD patient
Organism Homo sapiens
Characteristics emphysema: NO
gold stage: 2
tissue: Lung
Extracted molecule total RNA
Extraction protocol RNA later presserved tissue, RNA extracted with miRNeasy Mini Kit, Quigen
Label biotin
Label protocol cRNA amplification and biotin labeling was synthesized from 150 ng total RNA by means of cDNA synthesis followed by an in vitro transcription reaction in the presence of T7 RNA Polymerase and biotinylated nucleotide analog/ribonucleotide mix (3'IVT Express Kit, Affymetrix Inc, Santa Clara, CA)
Biotin-labeled cRNA was cleanup and quantified with magnetic beads and subsequently fragmented.
Hybridization protocol Hybridization was performed with GeneChip® Hybridization Wash and Stain Kit (Affymetrix Inc) according to manufactures instructions
Scan protocol GeneChips were scanned using the GeneChip®Scanner 3000 7G (Affymetrix Inc).
Description former smoker
Data processing Raw expression measures were summarized after background correction and normalization steps using the rma methodology in the affy package from the Bioconductor project.
Submission date Jun 12, 2015
Last update date Jan 22, 2016
Contact name Maria Rosa Faner
Organization name Fundaci├│ Privada Clinic
Department Cellex
Lab 606
Street address C/Casanova 143, planta 2A,
City Barcelona
State/province Barcelona
ZIP/Postal code 08036
Country Spain
Platform ID GPL13667
Series (1)
GSE69818 COPD lung tissue expression

Data table header descriptions
VALUE RMA summarized log2 values

Data table
11715100_at 4.878187352
11715101_s_at 4.825138753
11715102_x_at 4.411045771
11715103_x_at 5.659011055
11715104_s_at 4.082109272
11715105_at 4.193630957
11715106_x_at 4.739733539
11715107_s_at 4.662941152
11715108_x_at 5.43883843
11715109_at 4.389584457
11715110_at 4.741771906
11715111_s_at 4.335998826
11715112_at 5.9232382
11715113_x_at 5.126629772
11715114_x_at 5.553653619
11715115_s_at 3.674994155
11715116_s_at 3.850508054
11715117_x_at 3.653991992
11715118_s_at 5.567561586
11715119_s_at 6.226314962

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.

Supplementary file Size Download File type/resource
GSM1709469_65_alvarAgusti140413_Hg_U219_96_E09_2.CEL.gz 2.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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