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Sample GSM172144 Query DataSets for GSM172144
Status Public on Jul 02, 2007
Title Developmental regulation of the transcriptome of chicken retinal pigment epithelium (E7 replicate 1)
Sample type RNA
 
Source name Retinal Pigment Epithelium
Organism Gallus gallus
Characteristics Isolated from chicken embryos on embryoinic day 7
Extracted molecule total RNA
Extraction protocol RNeasy Protect kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description E7, replicate 1
Data processing signal value generated from global scaling
 
Submission date Feb 27, 2007
Last update date Jul 02, 2007
Contact name Lawrence J Rizzolo
E-mail(s) lawrence.rizzolo@yale.edu
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE7176 Develomental Time Course of the Retinal Pigment Epithelial Transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Detection
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 582.386 P 0.000581214
AFFX-BioB-M_at 703.965 P 4.42873e-05
AFFX-BioB-3_at 453.729 P 4.42873e-05
AFFX-BioC-5_at 1749.01 P 6.02111e-05
AFFX-BioC-3_at 1815.01 P 4.42873e-05
AFFX-BioDn-5_at 3962.43 P 4.42873e-05
AFFX-BioDn-3_at 7639.96 P 7.00668e-05
AFFX-CreX-5_at 19272.7 P 4.42873e-05
AFFX-CreX-3_at 22859 P 4.42873e-05
AFFX-DapX-5_at 19.4663 A 0.559354
AFFX-DapX-M_at 32.1387 A 0.574038
AFFX-DapX-3_at 9.06042 A 0.814869
AFFX-LysX-5_at 4.75794 A 0.843268
AFFX-LysX-M_at 14.3778 A 0.860518
AFFX-LysX-3_at 7.06233 A 0.645559
AFFX-PheX-5_at 4.62843 A 0.860518
AFFX-PheX-M_at 3.66207 A 0.994435
AFFX-PheX-3_at 14.8175 A 0.737173
AFFX-ThrX-5_at 14.3975 A 0.760937
AFFX-ThrX-M_at 7.65514 A 0.883887

Total number of rows: 38535

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM172144.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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