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Sample GSM172347 Query DataSets for GSM172347
Status Public on Dec 28, 2007
Title C57BL/6J;129S5/SvEvBrd granulosa cell replicate 3
Sample type RNA
 
Source name 21-day granulosa cells
Organism Mus musculus
Characteristics Strain: C57BL/6J;129S5/SvEvBrd, gender: female, age: 21d treated for 44-46h PMSG pooled from 2-3 females, cell type: isolated granulosa cells,
Treatment protocol granulosa cells collected from 2-3 female mice after 44-46 h PMSG injected i.p.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Prep with on column DNAse treatment
Label Biotin
Label protocol Affymetrix Standard Protocol
 
Hybridization protocol Affymetrix standard
Scan protocol GeneChip Scanner 3000
Description No additional descriptions
Data processing MAS5 default
 
Submission date Feb 27, 2007
Last update date Aug 28, 2018
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (2)
GSE7150 Activin-deficient granulosa cells
GSE8156 Smad1/5/8 mutant granulosa cell tumor gene expression
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5 normalized signal intestity
ABS_CALL MAS5 flagged detection call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 417 P
AFFX-BioB-M_at 684.7 P
AFFX-BioB-3_at 501.3 P
AFFX-BioC-5_at 1326.3 P
AFFX-BioC-3_at 1661.6 P
AFFX-BioDn-5_at 2852 P
AFFX-BioDn-3_at 6398.1 P
AFFX-CreX-5_at 16777.9 P
AFFX-CreX-3_at 23300.6 P
AFFX-DapX-5_at 27.9 A
AFFX-DapX-M_at 30 A
AFFX-DapX-3_at 4.2 A
AFFX-LysX-5_at 63.8 M
AFFX-LysX-M_at 36.7 A
AFFX-LysX-3_at 32.1 A
AFFX-PheX-5_at 6.5 A
AFFX-PheX-M_at 2.7 A
AFFX-PheX-3_at 14.1 A
AFFX-ThrX-5_at 30 A
AFFX-ThrX-M_at 72.1 A

Total number of rows: 45101

Table truncated, full table size 829 Kbytes.




Supplementary file Size Download File type/resource
GSM172347.CHP.gz 242.0 Kb (ftp)(http) CHP
GSM172347.cel.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data included within Sample table

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