NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM172370 Query DataSets for GSM172370
Status Public on Mar 02, 2007
Title Monkey 3318 at time point week 26 (VL_3318_wk_26)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3318 at time point week26
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 39042.4 P 0.000044
AFFX-BioB-M_at 67390.7 P 0.000044
AFFX-BioB-3_at 50131.8 P 0.000044
AFFX-BioC-5_at 127315.8 P 0.000044
AFFX-BioC-3_at 98262.0 P 0.000044
AFFX-BioDn-5_at 177296.0 P 0.000044
AFFX-BioDn-3_at 376182.5 P 0.000044
AFFX-CreX-5_at 776081.3 P 0.000044
AFFX-CreX-3_at 797277.8 P 0.000044
AFFX-DapX-5_at 360.3 A 0.156647
AFFX-DapX-M_at 43.5 A 0.937087
AFFX-DapX-3_at 19.2 A 0.891061
AFFX-LysX-5_at 203.0 A 0.327009
AFFX-LysX-M_at 67.2 A 0.529762
AFFX-LysX-3_at 50.5 A 0.883969
AFFX-PheX-5_at 57.0 A 0.724854
AFFX-PheX-M_at 40.8 A 0.804754
AFFX-PheX-3_at 82.1 A 0.672921
AFFX-ThrX-5_at 62.4 A 0.686307
AFFX-ThrX-M_at 19.5 A 0.868639

Total number of rows: 52865

Table truncated, full table size 1984 Kbytes.




Supplementary file Size Download File type/resource
GSM172370.cel.gz 3.6 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap