NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM172372 Query DataSets for GSM172372
Status Public on Mar 02, 2007
Title Monkey 3319 at time point week 2 (VL_3319_wk_2)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3319 at time point week2
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7561.3 P 0.000070
AFFX-BioB-M_at 13583.2 P 0.000044
AFFX-BioB-3_at 7913.0 P 0.000044
AFFX-BioC-5_at 22735.6 P 0.000044
AFFX-BioC-3_at 22699.6 P 0.000044
AFFX-BioDn-5_at 39149.2 P 0.000044
AFFX-BioDn-3_at 77797.4 P 0.000044
AFFX-CreX-5_at 178925.4 P 0.000052
AFFX-CreX-3_at 185397.7 P 0.000044
AFFX-DapX-5_at 80.5 A 0.313723
AFFX-DapX-M_at 50.8 A 0.772364
AFFX-DapX-3_at 165.6 A 0.327065
AFFX-LysX-5_at 31.1 A 0.368438
AFFX-LysX-M_at 55.1 A 0.544587
AFFX-LysX-3_at 105.0 A 0.287743
AFFX-PheX-5_at 31.6 A 0.737173
AFFX-PheX-M_at 21.6 A 0.843268
AFFX-PheX-3_at 149.3 A 0.455413
AFFX-ThrX-5_at 89.1 A 0.574038
AFFX-ThrX-M_at 26.8 A 0.737173

Total number of rows: 52865

Table truncated, full table size 1983 Kbytes.




Supplementary file Size Download File type/resource
GSM172372.cel.gz 4.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap