NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM172379 Query DataSets for GSM172379
Status Public on Mar 02, 2007
Title Monkey 3333 at baseline (VL_3333_baseline)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3333 at baseline
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1821.6 P 0.000662
AFFX-BioB-M_at 2814.1 P 0.000070
AFFX-BioB-3_at 1651.7 P 0.000070
AFFX-BioC-5_at 5629.9 P 0.000052
AFFX-BioC-3_at 6154.9 P 0.000044
AFFX-BioDn-5_at 11111.6 P 0.000044
AFFX-BioDn-3_at 22635.4 P 0.000052
AFFX-CreX-5_at 57998.9 P 0.000052
AFFX-CreX-3_at 62833.2 P 0.000044
AFFX-DapX-5_at 116.3 A 0.116092
AFFX-DapX-M_at 155.0 A 0.340661
AFFX-DapX-3_at 10.1 A 0.910522
AFFX-LysX-5_at 61.9 A 0.382599
AFFX-LysX-M_at 12.2 A 0.843268
AFFX-LysX-3_at 145.1 A 0.095667
AFFX-PheX-5_at 34.5 A 0.411380
AFFX-PheX-M_at 21.6 A 0.814869
AFFX-PheX-3_at 60.2 A 0.794268
AFFX-ThrX-5_at 21.5 A 0.953518
AFFX-ThrX-M_at 14.5 A 0.834139

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM172379.cel.gz 5.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap