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Sample GSM172382 Query DataSets for GSM172382
Status Public on Mar 02, 2007
Title Monkey 3333 at time point week 26 (VL_3333_wk_26)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3333 at time point week26
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1504.0 P 0.004484
AFFX-BioB-M_at 1670.9 P 0.000070
AFFX-BioB-3_at 1118.2 P 0.000044
AFFX-BioC-5_at 4010.0 P 0.000052
AFFX-BioC-3_at 5000.9 P 0.000044
AFFX-BioDn-5_at 7159.8 P 0.000044
AFFX-BioDn-3_at 18906.3 P 0.000070
AFFX-CreX-5_at 42049.9 P 0.000052
AFFX-CreX-3_at 46064.2 P 0.000044
AFFX-DapX-5_at 73.8 A 0.185131
AFFX-DapX-M_at 148.0 A 0.382599
AFFX-DapX-3_at 22.8 A 0.783476
AFFX-LysX-5_at 83.3 A 0.250796
AFFX-LysX-M_at 123.7 A 0.514890
AFFX-LysX-3_at 79.9 A 0.195266
AFFX-PheX-5_at 77.8 A 0.313723
AFFX-PheX-M_at 8.6 A 0.932322
AFFX-PheX-3_at 52.0 A 0.617401
AFFX-ThrX-5_at 25.8 A 0.814890
AFFX-ThrX-M_at 19.7 A 0.760937

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM172382.cel.gz 5.2 Mb (ftp)(http) CEL

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