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Sample GSM172383 Query DataSets for GSM172383
Status Public on Mar 02, 2007
Title Monkey 3334 at baseline (VL_3334_baseline)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3334 at baseline
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3675.4 P 0.000446
AFFX-BioB-M_at 6042.0 P 0.000052
AFFX-BioB-3_at 3758.7 P 0.000052
AFFX-BioC-5_at 9345.4 P 0.000044
AFFX-BioC-3_at 6666.3 P 0.000044
AFFX-BioDn-5_at 9514.6 P 0.000044
AFFX-BioDn-3_at 33403.4 P 0.000044
AFFX-CreX-5_at 108860.0 P 0.000052
AFFX-CreX-3_at 105910.9 P 0.000044
AFFX-DapX-5_at 26.5 A 0.455413
AFFX-DapX-M_at 254.2 A 0.368427
AFFX-DapX-3_at 16.6 A 0.891041
AFFX-LysX-5_at 18.2 A 0.876428
AFFX-LysX-M_at 35.4 A 0.574038
AFFX-LysX-3_at 119.8 M 0.062929
AFFX-PheX-5_at 36.5 A 0.749223
AFFX-PheX-M_at 60.4 A 0.712257
AFFX-PheX-3_at 107.5 A 0.603080
AFFX-ThrX-5_at 22.6 A 0.737173
AFFX-ThrX-M_at 17.9 A 0.749223

Total number of rows: 52865

Table truncated, full table size 1984 Kbytes.




Supplementary file Size Download File type/resource
GSM172383.cel.gz 4.7 Mb (ftp)(http) CEL

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