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Sample GSM172387 Query DataSets for GSM172387
Status Public on Mar 02, 2007
Title Monkey 3336 at baseline (VL_3336_baseline)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3336 at baseline
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2468.6 P 0.000509
AFFX-BioB-M_at 3257.8 P 0.000044
AFFX-BioB-3_at 1588.5 P 0.000052
AFFX-BioC-5_at 4648.8 P 0.000060
AFFX-BioC-3_at 4049.8 P 0.000044
AFFX-BioDn-5_at 4972.2 P 0.000044
AFFX-BioDn-3_at 19953.0 P 0.000060
AFFX-CreX-5_at 57180.1 P 0.000052
AFFX-CreX-3_at 54858.2 P 0.000044
AFFX-DapX-5_at 145.0 P 0.021902
AFFX-DapX-M_at 19.3 A 0.852061
AFFX-DapX-3_at 19.9 A 0.686277
AFFX-LysX-5_at 34.1 A 0.440641
AFFX-LysX-M_at 47.5 A 0.712274
AFFX-LysX-3_at 23.5 A 0.354453
AFFX-PheX-5_at 42.4 A 0.617401
AFFX-PheX-M_at 7.1 A 0.960339
AFFX-PheX-3_at 17.1 A 0.921998
AFFX-ThrX-5_at 46.6 A 0.603080
AFFX-ThrX-M_at 40.6 A 0.425962

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM172387.cel.gz 5.0 Mb (ftp)(http) CEL

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