NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM172389 Query DataSets for GSM172389
Status Public on Mar 02, 2007
Title Monkey 3336 at time point week 20 (VL_3336_wk_20)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3336 at time point week20
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 12658.1 P 0.000052
AFFX-BioB-M_at 20415.0 P 0.000044
AFFX-BioB-3_at 13576.0 P 0.000052
AFFX-BioC-5_at 26218.5 P 0.000044
AFFX-BioC-3_at 18718.1 P 0.000044
AFFX-BioDn-5_at 30159.5 P 0.000044
AFFX-BioDn-3_at 91043.5 P 0.000044
AFFX-CreX-5_at 231112.3 P 0.000052
AFFX-CreX-3_at 211758.1 P 0.000044
AFFX-DapX-5_at 30.1 A 0.368438
AFFX-DapX-M_at 49.9 A 0.804734
AFFX-DapX-3_at 218.4 A 0.250796
AFFX-LysX-5_at 30.8 A 0.300606
AFFX-LysX-M_at 193.8 A 0.485110
AFFX-LysX-3_at 108.0 A 0.313723
AFFX-PheX-5_at 58.1 A 0.699394
AFFX-PheX-M_at 98.7 A 0.544591
AFFX-PheX-3_at 57.6 A 0.672921
AFFX-ThrX-5_at 128.5 A 0.470241
AFFX-ThrX-M_at 18.8 A 0.922016

Total number of rows: 52865

Table truncated, full table size 1983 Kbytes.




Supplementary file Size Download File type/resource
GSM172389.cel.gz 4.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap