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Sample GSM172390 Query DataSets for GSM172390
Status Public on Mar 02, 2007
Title Monkey 3336 at time point week 26 (VL_3336_wk_26)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3336 at time point week26
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2727.1 P 0.000754
AFFX-BioB-M_at 4315.2 P 0.000060
AFFX-BioB-3_at 2083.0 P 0.000297
AFFX-BioC-5_at 4915.6 P 0.000052
AFFX-BioC-3_at 4588.0 P 0.000044
AFFX-BioDn-5_at 6755.2 P 0.000044
AFFX-BioDn-3_at 24244.1 P 0.000052
AFFX-CreX-5_at 63947.1 P 0.000052
AFFX-CreX-3_at 61962.6 P 0.000044
AFFX-DapX-5_at 122.5 A 0.239063
AFFX-DapX-M_at 145.9 A 0.559354
AFFX-DapX-3_at 34.5 A 0.645547
AFFX-LysX-5_at 116.9 A 0.205732
AFFX-LysX-M_at 110.1 A 0.500000
AFFX-LysX-3_at 39.7 A 0.425962
AFFX-PheX-5_at 30.4 A 0.749204
AFFX-PheX-M_at 23.0 A 0.852061
AFFX-PheX-3_at 37.3 A 0.783476
AFFX-ThrX-5_at 31.5 A 0.904333
AFFX-ThrX-M_at 22.3 A 0.834139

Total number of rows: 52865

Table truncated, full table size 1985 Kbytes.




Supplementary file Size Download File type/resource
GSM172390.cel.gz 5.2 Mb (ftp)(http) CEL

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