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Sample GSM172393 Query DataSets for GSM172393
Status Public on Mar 02, 2007
Title Monkey 3337 at time point week 20 (VL_3337_wk_20)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3337 at time point week20
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1600.2 P 0.002023
AFFX-BioB-M_at 1774.2 P 0.000390
AFFX-BioB-3_at 552.4 A 0.072700
AFFX-BioC-5_at 2133.7 P 0.000127
AFFX-BioC-3_at 1620.4 P 0.000052
AFFX-BioDn-5_at 2397.6 P 0.000044
AFFX-BioDn-3_at 11731.8 P 0.000070
AFFX-CreX-5_at 31463.3 P 0.000044
AFFX-CreX-3_at 31241.6 P 0.000044
AFFX-DapX-5_at 118.6 A 0.262827
AFFX-DapX-M_at 46.0 A 0.712257
AFFX-DapX-3_at 35.4 A 0.749204
AFFX-LysX-5_at 101.1 A 0.287743
AFFX-LysX-M_at 61.3 A 0.686277
AFFX-LysX-3_at 50.4 A 0.313723
AFFX-PheX-5_at 48.1 A 0.699394
AFFX-PheX-M_at 21.4 A 0.794268
AFFX-PheX-3_at 48.3 A 0.783476
AFFX-ThrX-5_at 92.6 A 0.603080
AFFX-ThrX-M_at 12.3 A 0.966323

Total number of rows: 52865

Table truncated, full table size 1984 Kbytes.




Supplementary file Size Download File type/resource
GSM172393.cel.gz 5.3 Mb (ftp)(http) CEL

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