NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM172394 Query DataSets for GSM172394
Status Public on Mar 02, 2007
Title Monkey 3337 at time point week 26 (VL_3337_wk_26)
Sample type RNA
 
Source name Cyno monkey PBMC in vivo
Organism Macaca fascicularis
Characteristics SIV, cyno monkey, PBMC, in vivo
Extracted molecule total RNA
Extraction protocol According to Affymetrix's protocol
Label biotin
Label protocol According to Affymetrix's protocol
 
Hybridization protocol According to Affymetrix's protocol
Scan protocol Affymetrix 3000 series scanner
Description The monkey 3337 at time point week26
Data processing The data were analyzed with MAS5.0 using Affymetrix default settings
 
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Maryanne Vahey
E-mail(s) mvahey@hivresearch.org
Phone 301-251-5058
Fax 301-762-7460
Organization name Walter Reed Army Institute of Research
Department
Lab Laboratory of Functional Genomics
Street address 1600 East Gude Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL3535
Series (1)
GSE7157 Infection of Macaques with SIVmac251 in vivo

Data table header descriptions
ID_REF Affymetrix ID
VALUE signal intensity output from MAS5.0
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1346.4 P 0.002275
AFFX-BioB-M_at 1738.1 P 0.000297
AFFX-BioB-3_at 975.7 P 0.001248
AFFX-BioC-5_at 2382.5 P 0.000258
AFFX-BioC-3_at 1962.5 P 0.000044
AFFX-BioDn-5_at 2808.8 P 0.000044
AFFX-BioDn-3_at 11560.6 P 0.000052
AFFX-CreX-5_at 35374.3 P 0.000052
AFFX-CreX-3_at 37368.6 P 0.000044
AFFX-DapX-5_at 145.4 A 0.102165
AFFX-DapX-M_at 45.2 A 0.699394
AFFX-DapX-3_at 18.5 A 0.686277
AFFX-LysX-5_at 12.6 A 0.699394
AFFX-LysX-M_at 102.0 A 0.686277
AFFX-LysX-3_at 82.7 A 0.262827
AFFX-PheX-5_at 30.9 A 0.760937
AFFX-PheX-M_at 18.0 A 0.814869
AFFX-PheX-3_at 68.9 A 0.588620
AFFX-ThrX-5_at 34.5 A 0.749204
AFFX-ThrX-M_at 12.6 A 0.843268

Total number of rows: 52865

Table truncated, full table size 1983 Kbytes.




Supplementary file Size Download File type/resource
GSM172394.cel.gz 5.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap