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Sample GSM172469 Query DataSets for GSM172469
Status Public on Jul 02, 2007
Title Developmental regulation of the transcriptome of chicken retinal pigment epithelium (E14, replicate 2)
Sample type RNA
 
Source name Retinal Pigment Epithelium
Organism Gallus gallus
Characteristics Isolated from chicken embryos on embryoinic day 14 (E14)
Extracted molecule total RNA
Extraction protocol RNeasy Protect kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description E14, replicate 2
Data processing signal value generated from global scaling
 
Submission date Feb 28, 2007
Last update date Jul 02, 2007
Contact name Lawrence J Rizzolo
E-mail(s) lawrence.rizzolo@yale.edu
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE7176 Develomental Time Course of the Retinal Pigment Epithelial Transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Detection
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 325.929 P 0.000753643
AFFX-BioB-M_at 513.531 P 4.42873e-05
AFFX-BioB-3_at 423.1 P 4.42873e-05
AFFX-BioC-5_at 1452.34 P 5.16732e-05
AFFX-BioC-3_at 1563.31 P 4.42873e-05
AFFX-BioDn-5_at 3054.35 P 4.42873e-05
AFFX-BioDn-3_at 6637.5 P 8.14279e-05
AFFX-CreX-5_at 15032 P 5.16732e-05
AFFX-CreX-3_at 20245.2 P 4.42873e-05
AFFX-DapX-5_at 8.99875 A 0.672921
AFFX-DapX-M_at 55.6381 A 0.275129
AFFX-DapX-3_at 6.72859 A 0.749204
AFFX-LysX-5_at 9.0086 A 0.544587
AFFX-LysX-M_at 9.67585 A 0.891021
AFFX-LysX-3_at 21.8586 A 0.287743
AFFX-PheX-5_at 3.96649 A 0.945787
AFFX-PheX-M_at 2.87281 A 0.966323
AFFX-PheX-3_at 50.8565 A 0.313723
AFFX-ThrX-5_at 6.608 A 0.631562
AFFX-ThrX-M_at 26.1127 A 0.156732

Total number of rows: 38535

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM172469.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM172469.EXP.gz 347 b (ftp)(http) EXP
Processed data included within Sample table

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